Research

How do bacteria maintain their shapes?

We have a new article out in PNAS featuring former student Salem Al Mosleh as first author.

Many bacteria are rod shaped. How do they get this way and maintain that shape as they grow?

Abstract. Bacterial growth is remarkably robust to environmental fluctuations, yet the mechanisms of growth-rate homeostasis are poorly understood. Here, we combine theory and experiment to infer mechanisms by which Escherichia coli adapts its growth rate in response to changes in osmolarity, a fundamental physicochemical property of the environment. The central tenet of our theoretical model is that cell-envelope expansion is only sensitive to local information, such as enzyme concentrations, cell-envelope curvature, and mechanical strain in the envelope. We constrained this model with quantitative measurements of the dynamics of E. coli elongation rate and cell width after hyperosmotic shock. Our analysis demonstrated that adaptive cell-envelope softening is a key process underlying growth-rate homeostasis. Furthermore, our model correctly predicted that softening does not occur above a critical hyperosmotic shock magnitude and precisely recapitulated the elongation-rate dynamics in response to shocks with magnitude larger than this threshold. Finally, we found that, to coordinately achieve growth-rate and cell-width homeostasis, cells employ direct feedback between cell-envelope curvature and envelope expansion. In sum, our analysis points to cellular mechanisms of bacterial growth-rate homeostasis and provides a practical theoretical framework for understanding this process.

Why is this important? The bacterial cell envelope is the critical structure that defines cell size and shape, and its expansion therefore defines cell growth. Although size, shape, and growth rate are important cellular variables that are robust to environmental fluctuations, the feedback mechanisms by which these variables influence cell-envelope expansion are unknown. Here, we explore how Escherichia coli cells achieve growth-rate and cell-width homeostasis during fluctuations in osmolarity, a key environmental property. A biophysical model in which the cell envelope softens after an osmotic shock and envelope expansion depends directly on local curvature quantitatively recapitulated all experimental observations. Our study elucidates new mechanisms of bacterial cell morphogenesis and highlights the intimate interplay between global cellular variables and the mechanisms of cell-envelope expansion.

Thermal fluctuations in linkages and origami

New paper called “Thermal Fluctuations of Singular Bar-Joint Mechanisms”

Manu Mannattil, J. M. Schwarz, and Christian D. Santangelo, Phys. Rev. Lett. 128, 208005 – Published 20 May 2022

A bar-joint mechanism is a deformable assembly of freely rotating joints connected by stiff bars. Here we develop a formalism to study the equilibration of common bar-joint mechanisms with a thermal bath. When the constraints in a mechanism cease to be linearly independent, singularities can appear in its shape space, which is the part of its configuration space after discarding rigid motions. We show that the free-energy landscape of a mechanism at low temperatures is dominated by the neighborhoods of points that correspond to these singularities. We consider two example mechanisms with shape-space singularities and find that they are more likely to be found in configurations near the singularities than others. These findings are expected to help improve the design of nanomechanisms for various applications.

Columnar liquid crystals as (almost) a gauge theory

Mechanics of Metric Frustration in Contorted Filament Bundles: From Local Symmetry to Columnar Elasticity

Daria W. Atkinson, Christian D. Santangelo, and Gregory M. Grason
Phys. Rev. Lett. 127, 218002 – Published 18 November 2021

From the abstract:

Bundles of filaments are subject to geometric frustration: certain deformations (e.g., bending while twisted) require longitudinal variations in spacing between filaments. While bundles are common—from protein fibers to yarns—the mechanical consequences of longitudinal frustration are unknown. We derive a geometrically nonlinear formalism for bundle mechanics, using a gaugelike symmetry under reptations along filament backbones. We relate force balance to orientational geometry and assess the elastic cost of frustration in twisted-toroidal bundles.

Nonlinear mechanisms and topology

What factors govern how mechanisms behave?

New paper! Topology in non-linear mechanical systems, PRL 127, 076802 (2021)

Abstract. Many advancements have been made in the field of topological mechanics. The majority of the works, however, concerns the topological invariant in a linear theory. We, in this work, present a generic prescription of defining topological indices which accommodates non-linear effects in mechanical systems without taking any approximation. Invoking the tools of differential geometry, a Z-valued quantity in terms of the Poincare-Hopf index, that features the topological invariant of non-linear zero modes (ZMs), is predicted. We further identify one type of topologically protected solitons that are robust to disorders. Our prescription constitutes a new direction of searching for novel topologically protected non-linear ZMs in the future.

B. G. C. and C. D. S. were partially supported by EFRI Grant No. 1240441. B. G. C. was partially supported by NSF Award No. PHY-1554887. C.D.S. was partially supported by DMR Grant No. 1822638. K. R. thanks the Swedish Research Council for sponsorship in part.